FastQCFastQC Report
Wed 8 May 2024
EGAF00007959973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432106
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41160.9525440516910202No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17500.40499321925638615No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12280.2841895275696241No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10700.24762442548819041No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10230.23674746474244748No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9410.2177706396115768No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9350.21638209143126919No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9080.2101336246198849No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9080.2101336246198849No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8060.18652830555465558No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7250.16778290512050284No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6470.14973177877650393No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6210.1437147366618376No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5350.12381221274409521No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5110.11825802002286476No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4610.106686785186968No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4420.10228971594932726No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4390.10159544185917345No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4380.10136401716245552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)