FastQCFastQC Report
Wed 8 May 2024
EGAF00007959974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461169
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14060.30487738768217293No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13450.29165013259781125No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10520.22811594014341816No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10480.22724857915427968No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9820.21293712283349486No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9670.2096845191242256No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8920.19342150057787927No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8590.18626577241748687No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7340.15916074150690962No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6210.13465779356374777No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6050.1311883496071939No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5610.1216473787266707No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5140.11145588710429365No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5110.11080536636243979No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)