FastQCFastQC Report
Wed 8 May 2024
EGAF00007959975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461169
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19130.41481539305547427No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13210.2864459666629804No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11630.25218520759201074No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10800.23418746706738744No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10300.22334545470315656No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10000.216840247284618No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9710.2105518801133641No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9580.20773295689866406No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9160.1986256665127101No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8550.1853984114283484No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7600.1647985879363097No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6610.14333140345513248No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6550.1420303619714248No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5960.12923678738163233No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5590.12121369823210146No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5430.11774425427554756No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4960.10755276265317054No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4720.1023485967183397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)