FastQCFastQC Report
Wed 8 May 2024
EGAF00007959976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437996
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13560.30959186841888964No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12830.2929250495438315No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10360.23653184047342898No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9550.21803852089973424No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9410.21484214467712034No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9400.2146138320897908No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8700.19863195097672126No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8350.1906410104201865No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7060.16118868665467265No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5890.1344761139371136No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5460.1246586726819423No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5180.11826592023671449No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5070.11575448177608928No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4640.105937040520918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)