FastQCFastQC Report
Wed 8 May 2024
EGAF00007959977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437996
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38500.879003461218824No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17480.399090402652079No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12510.28561904674928534No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10600.24201134256933854No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9970.22762764956757597No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9620.2196367090110412No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9460.21598370761376817No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9320.21278733139115427No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9260.21141745586717686No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7940.18128019433967432No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7320.1671248139252413No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6370.14543511812893267No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6300.1438369300176257No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5420.12374542233262403No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5360.12237554680864665No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4810.1098183545055206No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4550.10388222723495193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)