FastQCFastQC Report
Wed 8 May 2024
EGAF00007959978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435278
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13230.3039436865635295No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9310.21388629795211336No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8150.1872366625466943No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7590.174371321316492No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6390.14680273296605847No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6360.14611351825729763No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6220.14289718294974704No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5640.12957236524703752No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5460.1254370769944725No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5380.12359917110444359No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5370.12336943286819No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4510.1036119445503793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)