FastQCFastQC Report
Wed 8 May 2024
EGAF00007959979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435278
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17650.4054879869876263No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14110.3241606513538474No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13050.2998083983109645No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9680.22238661269349705No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8970.20607519791949053No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8660.19895331259562854No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8340.19160168903551295No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6700.15392461828992046No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5770.13255896231833447No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5290.1215315269781611No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5260.12084231226940025No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4740.10889592398421238No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4520.1038416827866329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)