FastQCFastQC Report
Wed 8 May 2024
EGAF00007959980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412111
Total Bases18.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12410.3011324618852688No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8280.2009167433045951No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8240.19994613101809947No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7190.17446755849758924No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6670.16184959877314606No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6380.15481265969605276No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6320.15335674126630933No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5380.13054735253366204No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5360.13006204639041422No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5030.1220544950268253No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4880.11841469895246669No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4370.10603939229964744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)