FastQCFastQC Report
Wed 8 May 2024
EGAF00007959981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412111
Total Bases12.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39430.9567810614130658No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16660.4042600173254293No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13610.33025083048013765No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12420.3013751149568927No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8450.20504184552220156No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8340.20237266173433857No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7960.1931518450126301No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6860.1664600071340003No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5400.13103265867690986No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5150.12496633188631219No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4710.11428959673486026No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4620.11210571909024511No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4280.10385551465503227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)