FastQCFastQC Report
Wed 8 May 2024
EGAF00007959982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440996
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13410.3040843907881251No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8450.19161171529900498No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8330.18889060218233272No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7870.17845966856842238No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6710.15215557510725722No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6680.15147529682808916No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6210.14081760378778946No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5570.12630500049887072No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5390.12222333082386236No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5100.11564730745857105No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5030.11405999147384557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)