FastQCFastQC Report
Wed 8 May 2024
EGAF00007959983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440996
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17630.39977686872443285No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13260.3006829993922847No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13180.2988689239811699No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9390.21292710137960436No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8860.20090885178096854No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8770.19886801694346434No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8250.1870765267712179No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7030.15941187675171659No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5900.13378806156971945No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5510.12494444394053461No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5040.11428675090023492No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4660.10566989269743944No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4560.10340229843354587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)