FastQCFastQC Report
Wed 8 May 2024
EGAF00007959984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417949
Total Bases18.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12900.30865009845698876No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8820.211030532433383No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8010.1916501774139907No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7090.16963792233023647No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6310.1509753582374883No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6170.14762566724648224No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5490.13135573957588126No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5340.12776678494266047No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5310.12704899401601633No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4880.11676065740078335No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4700.11245391184091838No Hit

[OK]Adapter Content

Adapter graph