FastQCFastQC Report
Wed 8 May 2024
EGAF00007959985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417949
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37250.8912570672498319No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16370.3916745823054966No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12900.30865009845698876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12640.30242924375940605No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8910.21318390521331548No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8500.203374095882512No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8170.1954783956894262No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6390.15288946737520606No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5250.125613412162728No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5200.1244170939516544No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4510.1079079026388387No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4210.1007299933723971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)