FastQCFastQC Report
Wed 8 May 2024
EGAF00007959987

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959987
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384351
Total Bases11.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12110.3150765836435966No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10830.28177369123535523No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9070.2359822141740232No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8690.22609541799032654No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7960.20710236216375136No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7000.18212519285757028No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6980.18160483516369152No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5490.14283818696972297No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4670.12150352152069331No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4540.11812119651048131No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4250.1105760099492391No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT3910.10172992915329997No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA3850.10016885607166366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)