FastQCFastQC Report
Wed 8 May 2024
EGAF00007959989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences363563
Total Bases11.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35780.98414855197036No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11100.305311596614617No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10330.28413232369630576No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8400.23104661365430473No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8230.22637067028272953No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6590.18126156952165098No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6390.17576045967273898No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4810.13230169186633403No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4080.11222264091780518No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC3900.10727164205378435No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT3730.10259569868220915No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA3700.10177053220487232No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA3660.10067031023508993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)