FastQCFastQC Report
Wed 8 May 2024
EGAF00007959991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389039
Total Bases12 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12490.32104750423479395No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11570.2973994895113343No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9190.23622310359629756No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8880.22825475080904484No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7820.2010081251494066No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7220.1855855068514982No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7090.182243939553618No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5890.15139870295780117No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4370.11232806993643311No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4190.10770128444706059No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4150.10667310989386668No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4120.10590197897897126No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA3920.10076110621300177No Hit
ACTAAACTGAACGGTGGCGACGATAGCGATT3910.1005040625747033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)