FastQCFastQC Report
Wed 8 May 2024
EGAF00007959992

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959992
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences367623
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12610.3430144468654029No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10720.2916030825057192No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7670.20863765324802855No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6870.1868762291804376No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6420.17463542814241764No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4430.12050388577428507No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4210.11451949415569754No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT4020.10935115593964469No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT3780.1028227287193674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)