FastQCFastQC Report
Wed 8 May 2024
EGAF00007959993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences367623
Total Bases11.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32910.895210582580524No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12340.33566996624259093No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10580.2877948332938907No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8470.23039907731561954No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8370.22767889930717067No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6810.18524412237536825No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6690.1819799087652296No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4910.13356074021483966No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4350.11832774336752597No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4200.11424747635485266No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC3950.10744703133373047No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)