FastQCFastQC Report
Wed 8 May 2024
EGAF00007959995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434030
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19630.4522728843628321No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12460.28707693016611757No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8820.20321175955579107No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7890.18178466926249337No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7870.1813238716217773No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7670.1767158952146165No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7100.16358316245420823No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6830.15736239430454116No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6470.14906803677165173No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6380.14699444738842937No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6050.13939128631661404No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5520.12718014883763795No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4680.10782664792756262No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4440.10229707623896965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)