FastQCFastQC Report
Wed 8 May 2024
EGAF00007959997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411423
Total Bases12.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39570.9617838574897367No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17550.42656827644541023No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10410.25302425970351683No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7430.1805927233042392No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6870.16698142787350245No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6630.16114801554604385No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6610.16066189785208898No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6340.15409930898369803No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6180.15021036743205896No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5980.14534919049251013No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5730.1392727193180741No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5060.12298777657058549No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4370.10621671612914202No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4130.10038330380168342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)