FastQCFastQC Report
Wed 8 May 2024
EGAF00007959999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439078
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19510.44434018557067306No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12010.273527710338482No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8590.1956372216326029No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8440.19222097212795902No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7460.16990147536428607No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7250.16511872605778471No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7170.1632967263219747No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6630.15099822810525693No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6610.1505427281713044No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6450.14689872869968434No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6230.14188822942620674No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5790.13186723087925153No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4670.106359234577911No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4520.10294298507326717No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4500.10248748513931466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)