FastQCFastQC Report
Wed 8 May 2024
EGAF00007960001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415916
Total Bases12.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37590.9037882649381126No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18210.43782879235230193No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10930.2627934486771367No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8030.19306783100433741No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7390.1776801084834438No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6360.15291549255138057No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6280.15099202723626887No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5890.1416151338250993No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5780.1389703690168207No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5750.13824906952365382No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5710.13728733686609798No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5020.1206974485232595No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4520.10867579030381135No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4380.10530972600236586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)