FastQCFastQC Report
Wed 8 May 2024
EGAF00007960003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466659
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG15280.32743395070061865No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG14350.30750505186870924No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12780.2738616420126902No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG12050.2582185278758151No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11300.2421468352694366No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8800.1885745265815081No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8210.175931461731157No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7800.16714560310633675No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7710.1652169999935713No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7200.15428824902123392No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG7030.1506453320304548No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6240.1337164824850694No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6100.1307164331985454No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6030.1292164085552834No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5810.1245020453907457No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5690.12193057457372514No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5590.119787682226208No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5580.11957339299145629No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5320.11400187288791172No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4850.10393027885458117No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC4760.10200167574181576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)