FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441179
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40330.91414142558916No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG14710.3334247550314045No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG12810.2903583352788777No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11280.25567853410973773No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG11270.2554518687426192No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10300.2334653281321187No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7870.17838564392230818No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6990.15843909161587474No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6980.15821242624875617No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6730.1525457920707921No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6220.14098585834774546No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5910.13395923196707007No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5750.13033258609317305No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5500.12466595191520903No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5380.12194596750978628No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5170.11718599480029647No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4830.10947937231826536No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC4810.10902604158402826No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4680.10607939181148694No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4580.10381273814030134No Hit

[OK]Adapter Content

Adapter graph