FastQCFastQC Report
Wed 8 May 2024
EGAF00007960007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472692
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG14900.3152158276425241No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG14700.3109847427077251No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12520.2648659169184162No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG12050.2549228673216386No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11120.23524832237482332No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9710.20541917358449052No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8210.17368603657349818No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG7400.15655014258756228No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7380.1561270340940824No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC7340.1552808171071226No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6940.14681864723752464No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6610.1398373570951063No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6360.13454850092660758No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6030.12756721078418928No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5890.12460545132983No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5830.1233361258493903No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5540.11720105269393177No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5280.1117006422786931No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5020.10620023186345444No Hit
CCGGCAGTTGCGCCGACCAGCGCGGCTAGCC4890.1034500266558351No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4860.10281536391561524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)