FastQCFastQC Report
Wed 8 May 2024
EGAF00007960011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478858
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA12690.2650054922336058No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9530.19901515689411056No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9020.18836481796273635No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5690.11882436964611638No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4800.10023848405999274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)