FastQCFastQC Report
Wed 8 May 2024
EGAF00007960015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484924
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA12030.24808011152263038No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10460.21570390411693377No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10090.20807384249903077No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5720.11795662825514926No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5310.10950169511098645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)