FastQCFastQC Report
Wed 8 May 2024
EGAF00007960018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464156
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14050.30269995432570085No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT13470.29020415549944417No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13230.28503348012306207No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC10260.22104637234033386No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC9210.19842466756866228No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8190.17644929721903843No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8160.17580296279699067No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8150.17558751798964142No Hit
CAGACGGGAGCGTTTTGCCGGCAGCAGACCGGAACCACCACCGC7650.16481527762217876No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7200.15512026129146236No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6990.15059592033712804No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6900.14865691707098477No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5850.12603521229931317No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5750.12388076422582062No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG5730.12344987461112213No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5450.11741742000534303No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5380.11590930635389826No Hit
GTAGCACTCGCGTTCGAAGTCTTCGATATCAGAGTCACAGAAGG5260.11332396866570722No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5210.11224674462896095No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG5090.10966140694076991No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4910.10578340040848334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)