FastQCFastQC Report
Wed 8 May 2024
EGAF00007960019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464156
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32380.697610286196882No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16980.36582528287903204No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT14520.31282586027111575No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG10170.2191073690741906No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG10140.21846103465214284No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9170.19756288833926525No Hit
GGCGAATCTGTGGCGGGCAACAGCATCTGCT9070.1954084402657727No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8810.18980687527469214No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8550.18420531028361153No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7750.16696972569567128No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7380.15899826782374893No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7350.15835193340170114No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7090.15275036841062056No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6510.1402545695843639No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC6170.13292944613448926No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5860.12625065710666242No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5620.12107998173028034No Hit
GGCGGCGATGACAACTCTAGCAGCGGCGGTA5290.11397030308775498No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5290.11397030308775498No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5140.11073863097751618No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5120.11030774136281767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)