FastQCFastQC Report
Wed 8 May 2024
EGAF00007960020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439549
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13730.31236562931550294No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT12660.2880224957854528No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12130.27596468198084856No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC9610.21863318992876793No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC8890.20225276362817343No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7800.17745461825644013No Hit
CAGACGGGAGCGTTTTGCCGGCAGCAGACCGGAACCACCACCGC7630.1735870176021331No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7590.17267699391876673No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6790.15447652025143954No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6740.15333899064723158No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6730.15311148472639No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6530.1485613663095582No Hit
GTAGCACTCGCGTTCGAAGTCTTCGATATCAGAGTCACAGAAGG5670.12899585711718148No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5610.12763082159213193No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG5600.12740331567129035No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5320.12103314988772583No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5090.11580051370836926No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4930.11216041897490384No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4870.11079538344985428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)