FastQCFastQC Report
Wed 8 May 2024
EGAF00007960021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439549
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42560.9682651991018066No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29950.6813802329205617No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15810.3596868608505536No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT13360.30394791024436413No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG9870.22454834387064926No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG9140.20794041164921317No Hit
GGCGAATCTGTGGCGGGCAACAGCATCTGCT8780.19975019849891593No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8250.18769238469431168No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7420.1688093932644597No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7300.16607932221436061No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6960.15834412090574657No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6730.15311148472639No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6560.14924388407208297No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6050.1376410821091619No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC5890.13400098737569643No Hit
GGCGGCGATGACAACTCTAGCAGCGGCGGTA5540.12603828014624083No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5350.1217156676502506No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5320.12103314988772583No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4820.10965785384564634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)