FastQCFastQC Report
Wed 8 May 2024
EGAF00007960023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468974
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30700.6546205120113269No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17530.37379470930158176No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT14420.30747973235190007No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG11150.23775305240802264No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG10440.22261362037127858No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9770.20832711408308352No Hit
GGCGAATCTGTGGCGGGCAACAGCATCTGCT9530.20320955959178974No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9090.19382737635775116No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8020.1710116125840665No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7830.16696021527845892No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7560.16120296647575344No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7100.1513943203674404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6540.13945335988775495No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6520.1390268970134805No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6100.1300711766537164No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC6090.12985794521657917No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5550.11834344761116822No Hit
GGCGGCGATGACAACTCTAGCAGCGGCGGTA5330.11365235599414891No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5280.11258619880846273No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG4900.10448340419724762No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4870.1038437098858359No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4780.10192462695160073No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)