FastQCFastQC Report
Wed 8 May 2024
EGAF00007960024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443515
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13700.3088959787154888No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT12680.28589788394981No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12060.27191864987655434No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC9960.22456963124133345No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC8690.19593474854289034No Hit
CAGACGGGAGCGTTTTGCCGGCAGCAGACCGGAACCACCACCGC7680.17316212529452216No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7660.172711182259901No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7480.16865269494831064No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7250.16346685005016742No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6870.15489893239236555No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6650.14993855901153288No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6460.14565460018263193No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5750.12964612245358106No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG5740.12942065093627048No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5390.12152914783040032No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5170.11656877444956766No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5120.11544141686301478No Hit
GTAGCACTCGCGTTCGAAGTCTTCGATATCAGAGTCACAGAAGG4930.11115745803411384No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4890.11025557196487154No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG4690.10574614161866001No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT4680.10552067010134944No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4550.10258954037631197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)