FastQCFastQC Report
Wed 8 May 2024
EGAF00007960025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443515
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40330.909326629313552No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29350.6617589033065397No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15800.3562449973507097No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT13440.3030337192654138No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG9940.2241186882067123No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG9520.21464888447966812No Hit
GGCGAATCTGTGGCGGGCAACAGCATCTGCT9010.20314983709682874No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8250.18601400178122499No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7820.17631872653687022No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7500.16910363798293182No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6770.15264421721925978No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6700.15106591659808574No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6570.14813478687304826No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC6150.1386649831460041No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5760.12987159397089162No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5750.12964612245358106No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5160.11634330293225709No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5080.11453953079377248No Hit
GGCGGCGATGACAACTCTAGCAGCGGCGGTA4850.10935368589562924No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4840.10912821437831866No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA4540.10236406885900139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)