FastQCFastQC Report
Wed 8 May 2024
EGAF00007960026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465295
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26880.5776980195359933No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23690.5091393631996904No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20500.44058070686338774No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13400.2879893400960681No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10630.22845721531501523No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9660.2076102257707476No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9100.19557485036374775No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC8860.19041683233217635No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8400.1805306311049979No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8130.1747278608194801No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8000.1719339343857123No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7680.16505657701028378No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7490.16097314606862312No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7400.15903888930678386No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6670.14334991779408762No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA6600.14184549586821263No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6500.13969632168839122No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6440.13840681718049838No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6410.137762064926552No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6090.13088470755112347No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6040.1298101204612128No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5860.12594160693753426No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5570.11970900181605218No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5200.11175705735071298No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5200.11175705735071298No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5200.11175705735071298No Hit
CTCACCTACAGAAACTTTAGTGTTGTTGCCTTTGTCACCGAACT5070.10896313091694518No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4880.1048796999752845No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4810.1033752780494095No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT4780.1027305257954631No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4760.10230069095949883No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4730.1016559387055524No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA4680.10058135161564168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)