FastQCFastQC Report
Wed 8 May 2024
EGAF00007960027

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960027
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465295
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53741.1549662042360223No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26940.5789875240438861No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13650.2933622755456216No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12000.25790090157856843No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10590.22759754564308665No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10330.222009692775551No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9860.21190857413039038No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9770.20997431736855116No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9350.20094778581330125No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG9200.19772402454356913No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8890.1910615845861228No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8430.18117538335894434No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7840.16849525569799803No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7640.16419690733835524No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7360.15817921963485532No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7210.1549554583651232No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6940.1491526880796054No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6850.14721843131776613No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6550.14077090877830195No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6530.14034107394233766No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6370.13690239525462342No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6250.13432338623883772No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5890.12658635919148067No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5840.12551177210156997No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5650.12142834115990929No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5640.12121342374192716No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5400.1160554057103558No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5290.11369131411255226No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5260.11304656185860583No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5230.11240180960465941No Hit
GTGCGTGCATCTAACCTGTCCGCCGAACAGC5050.10853329608098089No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5050.10853329608098089No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4940.10616920448317735No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4870.10466478255730235No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4830.1038051128853738No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4720.10144102128757024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)