FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007960028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439962
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25890.588459912446984No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21780.4950427536923643No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19480.442765511566908No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11390.25888599469954227No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9230.20979084557302677No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9040.20547229078874993No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC7900.179560962083089No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7770.17660616144121538No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7720.17546969965587936No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7360.16728717480146013No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7290.1656961283019897No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7210.1638777894454521No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7070.1606956964465113No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6780.15410421809156247No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6290.1429668925952696No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA6120.13910292252512715No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5950.13523895245498474No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5900.13410249066964874No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5860.13319332124137995No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5820.13228415181311112No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5820.13228415181311112No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5710.1297839358853719No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5540.1259199658152295No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5240.11910119510321346No Hit
CTCACCTACAGAAACTTTAGTGTTGTTGCCTTTGTCACCGAACT5100.11591910210427263No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5010.11387347089066784No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4880.11091867024879422No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT4790.1088730390351894No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4570.10387260717971097No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4520.10273614539437496No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT4470.10159968360903895No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4400.10000863710956855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)