FastQCFastQC Report
Wed 8 May 2024
EGAF00007960029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439962
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48511.1025952241329935No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41870.9516730990403717No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25730.5848232347339088No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11360.25820411762834067No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10290.23388383542215008No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9650.21933712456984922No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8900.2022901977898091No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8750.19888081243380112No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8440.19183474936471787No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8230.18706160986630663No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG8010.1820611780108282No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7940.1804701315113578No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7130.1620594505889145No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7060.1604684040894441No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6800.15455880280569684No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6520.1481946168078152No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6480.14728544737954644No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6180.14046667666753038No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5970.13569353716911917No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5940.13501166009791754No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5870.13342061359844715No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5840.13273873652724552No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5760.13092039767070793No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5430.12341974988749028No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5420.12319245753042309No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5350.12160141103095268No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5300.12046494924561667No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5110.11614639446133986No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5060.11500993267600385No Hit
GTGCGTGCATCTAACCTGTCCGCCGAACAGC4900.11137325496292862No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4840.11000950082052541No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA4710.1070547001786518No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4620.10500906896504698No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4570.10387260717971097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)