FastQCFastQC Report
Wed 8 May 2024
EGAF00007960037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460445
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43980.9551629401991552No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5470.1187981192107635No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5290.11488885751827035No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5220.11336858908230082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)