FastQCFastQC Report
Wed 8 May 2024
EGAF00007960039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490677
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10360.21113685785149905No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6200.12635603462155348No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5840.11901923261126973No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5500.1120900307126684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)