FastQCFastQC Report
Wed 8 May 2024
EGAF00007960050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483648
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA41910.8665393013100436No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA40030.8276680561069206No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC31800.657502977371973No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC30640.6335185920338758No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28930.5981622998544396No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA26150.5406824798200344No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC24910.5150439989413789No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA22470.46459408495434695No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19830.410008932115919No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18940.39160711922720653No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG17370.35914549424374753No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15990.3306123461691147No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15290.3161390101892285No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA15260.3155187243615191No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC14380.29732367341537647No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC12570.25989976181024216No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG12280.25390366547571785No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG10840.22412994574566628No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10250.2119309911340479No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9940.20552137091438402No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9700.20055908429270874No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9470.19580355961360327No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8890.18381136694455472No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8880.18360460500198492No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8790.1817437475188567No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7980.16499603017070266No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7950.16437574434299326No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7550.15610526664020113No Hit
CGGAGAACACTGCTGCAGCAGTACGTTTTTGCATGGGTTCAGCT6900.14266574037316396No Hit
ACCGCGAGCCGCGATACGACGCATTGCTTCCACCTGCTGGAAAC6820.14101164483260553No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG6160.12736535662299855No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6090.12591802302500993No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6080.12571126108244013No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5870.12136926028847428No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5670.1172340214370782No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5650.11682049755193859No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5590.11557992589651979No Hit
CTGCGGCTGTTGCGGAGATGGCTGCTGAGGCTGCAGCAGGAACG5580.11537316395394998No Hit
CTGCAGGTACGGCTGCTGCGGCTGGTGCGGCTGCTGCGGGGATG5550.11475287812624058No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5530.11433935424110098No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5420.11206497287283314No Hit
CTGCAGGTACGGTTGGATCAGCGGTTGCTGTTGCTGCGGGAAGC5320.1099973534471351No Hit
CGGGCACTGCGGAACGGTCAGGTACAGGCCGCGACGTTTTTCCG5310.10979059150456531No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5240.10834325790657667No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5120.10586211459573905No Hit
CACTACAACAACGAACGGTTGCTGAGGCTGCGGGAACGGCAGCT5100.10544859071059945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)