FastQCFastQC Report
Wed 8 May 2024
EGAF00007960056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464733
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA41170.8858850135454122No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA38180.8215469958018905No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC30140.6485444330400466No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28530.6139008850243043No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC28380.6106732252712849No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC24930.5364370509518369No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24050.5175014470674559No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA21620.46521335906854044No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18360.39506555376958385No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18200.39162271669969634No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG16370.35224526771285875No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14660.3154499465284368No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14600.31415888262722896No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14090.30318483946696273No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13810.2971598745946597No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG12130.2610100853608416No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC11790.2536940565873308No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG10680.2298093744149867No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10590.22787277856317498No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9380.2018363232221512No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9360.20140596858841528No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9220.19839348615226376No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8700.1872042656751296No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8420.18117930080282657No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7860.1691293710582205No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7640.1643954700871253No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7190.15471249082806687No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7100.15277589497625518No Hit
CGGAGAACACTGCTGCAGCAGTACGTTTTTGCATGGGTTCAGCT6750.14524468888587638No Hit
ACCGCGAGCCGCGATACGACGCATTGCTTCCACCTGCTGGAAAC6610.1422322064497249No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6040.12996709938825088No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5990.12889121280391108No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5690.1224358932978721No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5610.12071447476292839No Hit
CTGCGGCTGTTGCGGAGATGGCTGCTGAGGCTGCAGCAGGAACG5560.11963858817858858No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5450.11727163769304094No Hit
CTGCAGGTACGGCTGCTGCGGCTGGTGCGGCTGCTGCGGGGATG5250.11296809135568164No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5140.11060114087013403No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5130.11038596355326608No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5120.11017078623639809No Hit
CGGGCACTGCGGAACGGTCAGGTACAGGCCGCGACGTTTTTCCG5070.10909489965205829No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5060.10887972233519032No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5050.10866454501832234No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5040.10844936770145437No Hit
CTGCAGGTACGGTTGGATCAGCGGTTGCTGTTGCTGCGGGAAGC4880.10500653063156694No Hit
GCCACCATGGGCGCCTTTGCAACCGATACAAGACGGACGTTTCT4660.10027262966047171No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)