FastQCFastQC Report
Wed 8 May 2024
EGAF00007960070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426713
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA40060.93880430172036No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA38600.9045892672592586No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT26730.6264163500994814No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20220.47385479233114525No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19920.46682430579804224No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG18610.4361245146034923No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG16560.38808285662728814No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG15370.36019526004597935No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA15090.3536334726150832No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT15030.3522273753084626No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14610.3423846941621183No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14580.34168164550880803No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13910.3259802255848779No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG13530.3170749426429474No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG13470.3156688453363267No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12990.3044200668833619No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12160.2849690541417768No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT12000.28121946132412184No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11650.27301722703550163No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG11490.26926763421784666No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10810.25333186474281305No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10120.2371617457166761No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9830.23036560873467646No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9740.22825646277474554No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9730.22802211322364213No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9730.22802211322364213No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT9700.2273190645703318No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9440.2212259762416425No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9330.21864813117950474No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT9190.21536723746405664No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9120.2137267906063326No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT9080.21278939240191885No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8770.20552455631771238No Hit
CGGGAAAGACAGATCTTCGTCAGAAGAAGAGCTGGATGCCGCAG8740.20482150766440205No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8510.19943146798902306No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8110.19005748594488567No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8090.18958878684267882No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG7870.18443309671840324No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7870.18443309671840324No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7860.1841987471672998No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7590.17787130928750705No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT7370.1727156191632315No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG7070.16568513263012843No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6950.16287293801688724No Hit
GTCACCGTCCCACAGGTAGGTGAAGCGGATCTTTTTGCGGTCGC6680.15654550013709448No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6670.15631115058599104No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6650.15584245148378417No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT6560.15373330552385325No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6520.15279590731943954No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6390.14974936315509488No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6260.14670281899075022No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6010.14084408021316436No Hit
CGGCGGCAGCGGCATCGGAGGGATGTTGTAGAAAACGGTCGGGG5860.13732883694661283No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5790.1356883900888888No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5790.1356883900888888No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5770.13521969098668193No Hit
GCGCTGACGACGTTCCAGAACGTTGCCCTGGGATTTGTTTTCGA5670.13287619547564755No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5590.1310013990668201No Hit
GCCACCATGGGCGCCTTTGCAACCGATACAAGACGGACGTTTCT5310.12443961163592392No Hit
GGACTGGCCACGGTGGCCACCATCGTAGCGTTCCCAGCCGCTCG5280.12373656298261361No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5100.11951827106275177No Hit
CATGGACTCTTCGTGCAGCAGTACTGCAGTAACTTGAGGGCCCG5030.11787782420502772No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT4870.11412823138737277No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4870.11412823138737277No Hit
GCCGCTAGCGTCGTGACGATATTCCCACTGCTCGCCCTGTGCAG4760.111550386325235No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4750.11131603677413157No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4730.1108473376719247No Hit
CTGCATCTGGTGCATAACGCGATGAGACGGCGCACGTGCCAGCA4690.10990993946751096No Hit
CAGCAGAAATTCCTCTTCACCGGATTCCATCGGCGCGTGCTTGC4620.10826949260978691No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT4530.106160346649856No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT4480.10498859889433881No Hit
CAGGTTGTGAGATGCACGGGTACGACGGTCTTCCGGGGTATCGT4470.10475424934323538No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG4440.10405120068992509No Hit
GTTGTAGAAAACGGTAGGGCTACGCGGTTCCGGGGAATCTGGGT4360.1021764042810976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)