FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405167
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA37230.9188803629120832No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA36470.9001226654688067No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT25200.6219657573296937No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18650.4603040227856662No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18650.4603040227856662No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG17220.42500993417529065No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG15630.38576685662948856No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG14570.3596048049322872No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA14560.359357993123823No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13960.3445492846159732No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13920.3435620373821165No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13620.3361576831281916No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG13090.3230766572795909No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12990.32060853919494925No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12610.311229690473311No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG12450.3072807015378844No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11380.2808718380322188No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT10750.26532269409897646No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10590.26137370516354985No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG10190.25150123282498327No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10110.24952673835726993No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9370.23126266453092184No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT9280.22904135825474434No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9200.22706686378703103No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9130.22533918112778187No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9110.22484555751085353No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8940.22064975676696275No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8890.21941569772464192No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8710.21497308517228697No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8640.21324540251303784No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT8410.20756873091836206No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8040.19843669400518796No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8020.19794307038825967No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7960.19646219953747468No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7850.19374726964436886No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC7810.1927600224105122No Hit
CGGGAAAGACAGATCTTCGTCAGAAGAAGAGCTGGATGCCGCAG7720.19053871613433473No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7480.1846152327311948No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7380.18214711464655314No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7340.1811598674126965No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG7300.18017262017883984No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6970.17202783049952242No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT6770.16709159433023912No Hit
GTCACCGTCCCACAGGTAGGTGAAGCGGATCTTTTTGCGGTCGC6540.16141492273556335No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG6410.15820636922552922No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6370.15721912199167257No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6230.15376375667317427No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT6150.15178926220546096No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6120.15104882678006845No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6040.14907433231235515No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5940.14660621422771353No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5610.1384614245483961No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5480.13525287103836195No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5480.13525287103836195No Hit
GCGCTGACGACGTTCCAGAACGTTGCCCTGGGATTTGTTTTCGA5470.1350060592298978No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5330.1315506939113995No Hit
GGACTGGCCACGGTGGCCACCATCGTAGCGTTCCCAGCCGCTCG5310.13105707029447117No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5300.130810258486007No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5230.12908257582675786No Hit
CGGCGGCAGCGGCATCGGAGGGATGTTGTAGAAAACGGTCGGGG5030.12414633965747457No Hit
GCCACCATGGGCGCCTTTGCAACCGATACAAGACGGACGTTTCT4980.12291228061515375No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4910.12118459795590461No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4850.11970372710511962No Hit
CATGGACTCTTCGTGCAGCAGTACTGCAGTAACTTGAGGGCCCG4770.11772923263740631No Hit
GCCGCTAGCGTCGTGACGATATTCCCACTGCTCGCCCTGTGCAG4680.11550792636122884No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4610.11378024370197967No Hit
CAGCAGAAATTCCTCTTCACCGGATTCCATCGGCGCGTGCTTGC4600.11353343189351552No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4480.11057169019194554No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4440.10958444295808888No Hit
CAGGTTGTGAGATGCACGGGTACGACGGTCTTCCGGGGTATCGT4380.10810357210730391No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT4360.10760994849037557No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT4350.10736313668191141No Hit
CTGCATCTGGTGCATAACGCGATGAGACGGCGCACGTGCCAGCA4280.10563545402266225No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG4280.10563545402266225No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT4270.10538864221419811No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT4170.10292052412955645No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG4120.10168646508723564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)