FastQCFastQC Report
Wed 8 May 2024
EGAF00007960078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505456
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG28990.5735415149884461No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA28960.5729479915165712No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27580.5456459118103257No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG21060.41665347725618057No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15470.3060602703301573No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG15290.3024991294989079No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG14040.2777689848374537No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13080.2587762337374569No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12970.2565999810072489No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA12940.256006457535374No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12750.25224747554683297No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12510.24749928777183372No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG12410.2455208761989174No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11960.23661802412079389No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11770.23285904213225286No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11740.23226551866037795No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11580.22910006014371181No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT11320.22395619005412937No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10750.21267924408850622No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG10560.2089202620999652No Hit
GGTACGGTGAGTGGCACGGTCCTTCAGGTCGTAACGGGTGCTAG10320.20417207432496595No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10010.1980389984489253No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9710.19210376373017632No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9700.19190592257288466No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9680.1915102402583014No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9590.1897296698426767No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9420.18636637016871896No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG9050.1790462473489285No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG8900.17607862998955398No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8880.17568294767497072No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8290.16401031939476432No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8080.15985565509164001No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG8040.1590642904624735No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7980.1578772435187237No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7940.15708587888955716No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7900.15629451426039062No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7600.1503592795416416No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7100.1404672216770599No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6570.12998164034060333No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6560.1297837991833117No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6360.12582697603747903No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT6360.12582697603747903No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6330.12523345256560411No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6020.11910037668956348No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5970.11811117090310531No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5960.11791332974581369No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5950.11771548858852206No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5840.11553923585831408No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5830.11534139470102245No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5750.11375866544268937No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5610.11098888924060651No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5330.10544933683644077No Hit
AACAGAGGACAGACGGTCACGGGTCTCACGAGAACCGCGTTCAC5320.10525149567914911No Hit
GTTGACTGCATCGTTTTCGCGAATACCTTTCGCTACGCCGGTAA5250.10386660757810769No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG5210.10307524294894115No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5140.10169035484789972No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5070.10030546674685828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)