FastQCFastQC Report
Wed 8 May 2024
EGAF00007960090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454339
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8960.19720957258786942No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7420.16331417729932934No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC6470.14240468020574945No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6030.13272028155188087No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5940.13073938182722591No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5480.12061478323454514No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5170.1137916841829559No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4860.10696858513136666No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4860.10696858513136666No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4860.10696858513136666No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4620.10168618586562017No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4600.10124598592680795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)