FastQCFastQC Report
Wed 8 May 2024
EGAF00007960091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454339
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11240.2473923656124612No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9680.21305677038510892No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8930.1965492726796511No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8300.18268297460706653No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6740.14834737937971426No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6500.14306498011396776No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6420.14130418035871892No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5690.12523688259207333No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5650.1243564827144489No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5490.12083488320395123No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5370.11819368357107798No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5090.11203088442770706No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5040.11093038458067654No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4990.10982988473364602No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4960.10916958482542771No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4930.10850928491720939No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4820.10608818525374225No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4680.10300678568205678No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4670.10278668571265068No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4600.10124598592680795No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4590.10102588595740185No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4580.10080578598799575No Hit

[OK]Adapter Content

Adapter graph