FastQCFastQC Report
Wed 8 May 2024
EGAF00007960092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430117
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8010.186228398319527No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6760.1571665384069916No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC6000.13949692758017004No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5470.12717469897725503No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5370.12484975018425218No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4910.11415498573643915No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4870.11322500621923802No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4720.10973758302973377No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4590.10671514959883009No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4450.10346022128862613No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4430.10299523153002556No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4320.10043778785772244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)