FastQCFastQC Report
Wed 8 May 2024
EGAF00007960093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430117
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40210.9348619096664396No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10670.24807203621340237No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9130.21226782480115877No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7880.1832059648886233No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6180.14368183540757515No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5790.1346145351148641No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5360.1246172553049519No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5250.1220598116326488No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5150.11973486283964596No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5040.11717741916734284No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4790.11136504718483575No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4790.11136504718483575No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4760.1106675625469349No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4640.1078776239953315No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4570.10625015984022951No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4550.10578517008162897No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4490.10439020080582725No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4440.10322772640932584No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4320.10043778785772244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)