FastQCFastQC Report
Wed 8 May 2024
EGAF00007960094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458590
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8880.19363701781547787No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7800.17008656970278463No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC6380.13912209162868794No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6250.13628731546697484No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6170.1345428378289976No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5500.11993283761093788No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4990.10881179266883272No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4860.10597701650711966No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4750.1035783597549009No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4740.10336030005015373No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4720.1029241806406594No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4700.10248806123116509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)